|Year : 2017 | Volume
| Issue : 4 | Page : 408-413
Identification and characterization of Memecylon species using isozyme profiling
TR Bharathi1, Shailasree Sekhar2, N Geetha1, SR Niranjana3, HS Prakash1
1 Department of Studies in Biotechnology, University of Mysore, Mysore, India
2 Institution of Excellence, Vijnana Bhavana, University of Mysore, Mysore, India
3 Vice Chancellor, Gulbarga University, Kalaburagi, Karnataka, India
|Date of Web Publication||16-Nov-2017|
H S Prakash
Department of Studies in Biotechnology, University of Mysore, Mysore - 570 006, Karnataka
Source of Support: None, Conflict of Interest: None
| Abstract|| |
Background: The protein/isozyme fingerprint is useful in differentiating the species and acts as a biochemical marker for identification and systematic studies of medicinal plant species. Objective: In the present study, protein and isozyme profiles for peroxidase, esterase, acid phosphatase, polyphenol oxidase, alcohol dehydrogenase, and alkaline phosphatase of five species of Memecylon (Melastomataceae), Memecylon umbellatum, Memecylon edule, Memecylon talbotianum, Memecylon malabaricum, and Memecylon wightii were investigated. Materials and Methods: Fresh leaves were used to prepare crude enzyme extract for analyzing the five enzymes isozyme variations. Separation of isozymes was carried out using polyacrylamide gel electrophoresis (PAGE) and the banding patterns of protein were scored. Pair-wise comparisons of genotypes, based on the presence or absence of unique and shared polymorphic products, were used to regenerate similarity coefficients. The similarity coefficients were then used to construct dendrograms, using the unweighted pair group method with arithmetic averages. Results: A total of 50 bands with various Rf values and molecular weight were obtained through PAGE analysis. Among the five Memecylon species, more number of bands was produced in M. wightii and less number of bands was observed in M. edule. The results of similarity indices grouped M. malabaricum and M. wightii in one cluster with 98% similarity and M. umbellatum, M. edule, and M. talbotianum are grouped in another cluster with 79% similarity showing close genetic similarities which is in accordance with the morphological identification of Memecylon species. Conclusion: The protein/isozyme fingerprint is useful in differentiating the species and acts as a biochemical marker for identification of Memecylon species.
Abbreviations Used: SDS-PAGE: Sodium docecyl sulfate polyacrylamide gel electrophoresis; NTSYS PC2: Numerical taxonomy system, version 2.2 for Windows XP, Vista, Win7, Win 8 and Win10 including 64 bit
Keywords: Acid phosphatase, esterase, native polyacrylamide gel electrophoresis, peroxidase, polyphenol oxidase, sodium dodecyl sulfate-polyacrylamide gel electrophoresis
|How to cite this article:|
Bharathi T R, Sekhar S, Geetha N, Niranjana S R, Prakash H S. Identification and characterization of Memecylon species using isozyme profiling. Phcog Res 2017;9:408-13
|How to cite this URL:|
Bharathi T R, Sekhar S, Geetha N, Niranjana S R, Prakash H S. Identification and characterization of Memecylon species using isozyme profiling. Phcog Res [serial online] 2017 [cited 2020 Sep 25];9:408-13. Available from: http://www.phcogres.com/text.asp?2017/9/4/408/218499
- Biochemical characterization of Memecylon species was evaluated by SDS-PAGE of extracted protein and isozyme profiling on native PAGE.
- After electrophoresis, each gel was stained with specific stains. Genetic distance relationships were evaluated based on the banding patterns of protein on isozymes.
- Unique banding pattern of esterase, peroxidase, acid phosphatase, alcohol dehydrogenase and polyphenol oxidase are observed in all the five species of Memecylon, which represent the fingerprint of Memecylon species.
- SDS-PAGE and isozyme profiling of five Memecylon species revealed that M. malabaricum and M. wightii grouped in one cluster and M. umbellatum, M. edule and M. talbotianum grouped in another cluster showing close genetic similarities which is in accordance with the morphological identification of Memecylon species.
- This is the first report on the comparison of protein and isozyme profile of five different Memecylon species.
| Introduction|| |
The genus Memecylon L. (Melastomataceae) consists of 300–400 species, distributed in the tropical areas of Asia, Africa, America, and in India, mainly distributed in the Western Ghats. Genus Memecylon has great importance in traditional medicine. Several Memecylon species were used in the treatment of herpes, leucorrhea, gonorrhea, conjunctivitis, snake bite, and skin diseases. Several pharmacological and phytoconstituents are reported such as antioxidant, antimicrobial, anti-inflammatory, hepatoprotective, and antipyretic properties.,,,, Identification of Memecylon species is complex due to close morphological features which has been described in our previous paper. The diversity revealed by biochemical profiles such as protein and more importantly isozyme profile of selected enzymes are highly valuable in the accurate identification of the plant, predominantly medicinal plants., Sodium dodecyl sulfate-polyacrylamide gel electrophoresis (SDS-PAGE) of proteins is one of the molecular tools to study the molecular systematic and identification of genotypes in medicinal plants. Isozymes are used as classical biochemical markers, which can be separated using nondenaturing native polyacrylamide gel electrophoresis (native PAGE) and also used to analyze the genetic diversity before the introduction of DNA markers for solving various problems of plant taxonomy to distinguish or to authenticate species. Previous studies on isozymes signify that about 57 enzymes are attributed in plant system for biodiversity analysis. Since the biochemical markers have not been developed to know the generic and taxonomic status of Memecylon species, the present study was taken up.
| Materials and Methods|| |
Five Memecylon species, namely, Memecylon umbellatum Burm, Memecylon edule Roxb, Memecylon talbotianum Brandis, Memecylon malabaricum Clarke, and Memecylon wightii Thwaites, have been collected from different parts of Karnataka. Fresh leaf samples were collected from these plants, frozen in liquid nitrogen, and stored at −80°C until used for total protein isolation.
Isolation of total protein and sodium dodecyl sulfate-polyacrylamide gel electrophoresis
The total protein was isolated based on the method described by Wang et al. The protein was quantified by the Bradford method  with bovine serum albumin as standard. Protein extracts isolated from Memecylon species were analyzed by SDS-PAGE.
Native polyacrylamide gel electrophoresis
Fresh leaves were used to prepare crude enzyme extract for analyzing the isozyme variations among Memecylon species using five enzymes according to the method described by Smila et al. For this study, 500 mg of leaf tissue was taken and homogenized using 1.5 mL of cold homogenizing buffer, 0.1 M sodium phosphate buffer (pH 7.0) for peroxidase and esterase, 50 mM citrate buffer (pH 5.3), for acid phosphatase, 50 mM citrate buffer (pH 9.0) for alcohol dehydrogenase, and 0.01 M potassium phosphate buffer (pH 7.0) containing 1% Tween 80 for polyphenol oxidase in a prechilled pestle and mortar. The homogenate was centrifuged for peroxidase and esterase at 10,000 rpm for 20 min, for acid phosphatase and alcohol dehydrogenase at 10,000 rpm for 20 min, and for polyphenol oxidase at 18,000 rpm for 25 min. Supernatant was stored at 4°C.
Separation of isozymes was carried out using native PAGE. Isoenzyme analysis for peroxidase, esterase, acid phosphatase, alcohol dehydrogenase, and polyphenol oxidase was carried out as described by the previous studies.,,,, The gels are incubated at 37°C until the bands developed sufficiently to permit scoring; later, the bands were fixed by 7% acetic acid. The Rf of each bands was calculated, and the similarity index or pairing affinity was analyzed by the method described by Sneath and Sokal.
Genetic distance relationships
The banding patterns of protein on SDS-PAGE and isozymes on native PAGE were scored, and data were fed to the PC as 1 and 0 for the presence and absence of bands, respectively. Pair-wise comparisons of genotypes, based on the presence or absence of unique and shared polymorphic products, were used to regenerate similarity coefficients, according to Jaccard. The similarity coefficients were then used to construct dendrograms, using the unweighted pair group method with arithmetic averages (UPGMA) employing the Sequential, Agglomerative, Hierarchical, and Nested clustering from the NTSYS-PC (Numerical Taxonomy and Multivariate Analysis System), version 2.1 Program Rohlf.
| Results|| |
Sodium dodecyl sulfate-polyacrylamide gel electrophoresis analysis
In the present study, protein profiles of five Memecylon species were studied using SDS-PAGE. The total number of bands in all five Memecylon species varied from 7 to 14 [Figure 1]. More number of bands was produced in M. wightii (14); M. malabaricum (13) followed by M. talbotianum and M. umbellatum (8) and less number of bands was observed in M. edule (7). The molecular weights of the bands were calculated using standard curve. The molecular weight of the five plants varied from 14.4 to 85.08 kDa. The highest molecular weight protein was observed in M. talbotianum (~85.08 kDa) [Table S1].
|Figure 1: Sodium dodecyl sulfate-polyacrylamide gel electrophoresis protein banding patterns of Memecylon species M: Marker; (1) Memecylon umbellatum; (2) Memecylon edule; (3) Memecylon talbotianum; (4) Memecylon malabaricum; (5) Memecylon wightii|
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The similarity index [Table S2] represents the similarity between the species. The dendrogram [Figure 2] was constructed based on UPGMA. The dendrogram shows a distinct separation of the collected species into two major groups. In cluster I, the M. malabaricum and M. wightii clustered in the same cluster with 91% similarity showing a close genetic relationship with each other, cluster II is subdivided into two subclusters, in which M. umbellatum and M. edule are grouped together with 60% similarity with M. talbotianium as out-group.
|Figure 2: Dendrogram of five Memecylon species based on sodium dodecyl sulfate-polyacrylamide gel electrophoresis protein banding pattern|
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A total of 7 bands were present in the Memecylon species. The bands of Rf = 0.102 and 0.125 were commonly shared by M. umbellatum, M. edule, and M. talbotianum, and Rf = 0.397 band was present in M. malabaricum and M. wightii as marker bands [Table S3] and [Figure 2].
A total of 10 isozyme bands were observed. The Rf = 0.190, 0.220, and 0.710 bands was commonly shared by M. umbellatum, M. edule, and M. talbotianum, and Rf = 0.424 band was present in M. malabaricum and M. wightii [Table S3] and [Figure 2].
In the alcohol dehydrogenase enzyme system, a total of 7 bands at two were observed in the enzyme system of Memecylon species. The Rf = 0.196 bands were common for all five Memecylon species and Rf = 0.223 band was present only in M. malabaricum and M. wightii [Table S3] and [Figure 2].
In the acid phosphatase enzyme system, a total of 10 bands were observed for Memecylon species. The Rf = 0.213 band was present in M. malabaricum and M. wightii, Rf = 0.138 band was present in M. umbellatum, M. edule, and M. talbotianum, Rf = 0.816 band was present in M. wightii, Rf = 0.912 band was present in M. umbellatum and M. malabaricum, and Rf = 0.232 band was present in M. umbellatum and M. edule [Table S3] and [Figure 2].
A total of 11 bands were found in polyphenol oxidase enzyme system of Memecylon species. The Rf = 0.439 and 0.826 bands were common in M. malabaricum, M. wightii, M. edule, and M. talbotianum, and Rf = 0.231 and 0.534 bands were observed only in M. umbellatum [Table S3] and [Figure 2].
The isozyme analysis revealed that the genetic similarity indices ranged from 70% to 80% [Table S4]. The closest relationship was observed between M. malabaricum and M. wightii with 80% similarity and also between M. umbellatum, M. edule, and M. talbotianum with 78% similarity. As shown in [Figure 3], the dendrogram based on the similarity matrices of isozyme banding patterns classified the Memecylon species into two main clusters. M. malabaricum and M. wightii grouped in cluster I, whereas M. umbellatum, M. edule, and M. talbotianium grouped in cluster II showing close genetic relationships among these Memecylon species.
|Figure 3: Isozyme profiles of Memecylon species (a) zymogram of peroxidase; (b) zymogram of esterase; (c) zymogram of alcohol dehydrogenase; (d) zymogram of acid phosphatase; (e) zymogram of polyphenol oxidase; (f) peroxidase banding pattern of Memecylon species; (g) esterase banding pattern of Memecylon species; (h) alcohol dehydrogenase banding pattern of Memecylon species; (i) acid phosphatase banding pattern of Memecylon species; (j) polyphenol oxidase banding pattern of Memecylon species|
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Combined analysis of sodium dodecyl sulfate-polyacrylamide gel electrophoresis and isozyme systems
The combined data on the banding patterns of protein on SDS-PAGE and isozyme profiles of Memecylon species were analyzed using the NTSYS-PC2 software [Figure 4]. The similarity indices were 79% between M. umbellatum, M. edule, and M. talbotianum, followed by 98% similarity between M. malabaricum and M. wightii. The dendrogram resulted from the combination of the two techniques [Figure 5] revealed two different clusters: in cluster I, M. malabaricum and M. wightii grouped together, and in cluster II, M. umbellatum, M. edule, and M. talbotianum grouped together showing close genetic relationships among different Memecylon species [Table S5].
|Figure 5: Dendrogram of five Memecylon species based on sodium dodecyl sulfate-polyacrylamide gel electrophoresis and native polyacrylamide gel electrophoresis data|
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| Discussion|| |
The traditional taxonomic system of plants depends on morphological characters; however, the morphological characters between different species are sometimes difficult to distinguish; hence, the study of biochemical (total protein and isozymes) variations gains importance in the study of identification of inter- and intra-specific genetic variation among plant species.
In the present study, the protein and isozyme profiles of five species of Memecylon such as M. umbellatum, M. malabaricum, M. wightii, and M. edule of family Melastomataceae were investigated. SDS-PAGE and isozyme analysis revealed that M. malabaricum and M. wightii are grouped in one cluster, and M. umbellatum, M. edule, and M. talbotianum are grouped in another cluster, showing close genetic similarities which is in accordance with the morphological identification of Memecylon species. Similarity index was 98% between M. malabaricum and M. wightii indicating that these two species are sister species and 79% similarity observed in M. umbellatum, M. edule, and M. talbotianum showing close genetic relationships. Similar studies are carried out to study the genetic variability among different plant species which include Brassica rapa, Cucurbitaceae, Calotropis procera, and Gymnema sylvestre,,,, also in Solanum species. In addition to leaf proteins, seed proteins were also analyzed by several workers to know the taxonomic and generic status in several plant species including Datura, Hyoscyamus, Withania, Atropa, and Ebenıus., The dendrogram based on UPGMA revealed the generic status and interrelationships of these species.
In the present study, isozymes of peroxidase, esterase, acid phosphatase, alcohol dehydrogenase, and polyphenol oxidase have been used as biochemical markers to identify the systematic position of five different Memecylon species. Since 1930, electrophoresis and zymogram technique together are being used as a tool to study genetic variation and population genetics. In PAGE analysis, each zone is engaged by a specific gene locus coding for that isozyme. In certain enzyme systems, more than one distinct band could be resolved which represent allelic isozymes, coded by different alleles of the same gene at one locus. In the present observations, similar kind of banding profiles is detected in all the enzyme systems, specifying the existence of multiple alleles. The occurrence of common banding profiles suggests that protein shares similar functional properties. Similar observations were made in Brassica species, Plumbago species, Ocimum sanctum, Thelypteris ciliata, Nephrolepis, Aegle marmelos, Naringi crenulata, and Plantago ovata,,, which supports the present observations. The results from the present study suggest that stable expression of several proteins and isozyme systems such as peroxidase, esterase, acid phosphatase, alkaline dehydrogenase, and polyphenol oxidase have been utilized to assess the genetic similarity and differences at the various taxonomic levels.
| Conclusion|| |
The results from the present study suggest that unique banding profiles of isozymes are observed in all the five species of Memecylon, which represent the fingerprint of Memecylon species. Such fingerprinting is useful in differentiating the species and acts as a biochemical marker for these species in plant identification and systematic studies. These conclusions can be further used for accurate identification of the most important proteins present in different species with two-dimensional gel electrophoresis and several molecular marker systems.
The authors acknowledge the support from the UGC fellowship scheme (Or. No. DV9/192/NON-NETFS/2013-14 dated: 11-11-2013) and the Ministry of Human Resource Development and University Grant Commission, Government of India, under the Institution of Excellence scheme awarded to the University of Mysore, Mysore, India (F. No. 8-3/2008-U. I).
Financial support and sponsorship
Conflicts of interest
There are no conflicts of interest.
| References|| |
Ramasetty BT, Bajpe SN, Sampath Kumara KK, Saini R, Shashibhushan NB, Kini R, et al
. Identification and genetic diversity analysis of Memecylon
species using ISSR, RAPD and Gene-Based DNA barcoding tools. Elect J Biotech 2016c; 24:1-8.
Bharathi TR, Nadafi R, Prakash HS. In vitro
antioxidant and anti-inflammatory properties of different solvent extracts of Memecylon talbotianum
Brandis. Int J Phytopharmacy 2014;4:148-52.
Bharathi TR, Madhusudan MC, Pradeepkumar PM, Chandranayaka S, Prakash HS. Antimicrobial potential of Memecylon
L. species from Western Ghats against clinical isolates of pathogenic bacteria. Res J Pharm Biol Chem Sci 2015;6:1280-7.
Bharathi TR, Sampath Kumara KK, Prakash HS. Memecylon
species: A review of traditional information and taxonomic description. Int J Pharm Pharm Sci 2016a; 8:1-9.
Bharathi TR, Shailasree S, Sampath Kumara KK, Madhusudan MC, Prakash HS. Metabolite profiling by UPLC-PDA-ESI/HDMS and antibacterial activity of Memecylon talbotianu
m Brandis. Pharmacogn Commun 2016b; 6:1-10.
National Bureau of Plant Genetic Resources. Manual on Exploration and Collection of Plant Genetic Resources and Related Indigenous Knowledge. New Delhi, India: National Bureau of Plant Genetic Resources; 2000.
Jin SE, Seo CS, Shin HK, Ha H. Traditional herbal formulas to as treatments for musculoskeletal disorders: Their inhibitory effects on the activities of human microsomal cytochrome p450s and udp-glucuronosyl transferases. Pharmacogn Mag 2016;12:241.
Laemmli UK. Cleavage of structural proteins during the assembly of the head of bacteriophage T4. Nature 1970;227:680-5.
Valljos CE. Enzyme activity staining. In: Tanskley AS, Orton TJ, editors. Isozymes in Plant Genetics and Breeding, Part. Amsterdam: Elsevier Science Publisher, B.V.; 1983.
Wang W, Vignani R, Scali M, Cresti M. A universal and rapid protocol for protein extraction from recalcitrant plant tissues for proteomic analysis. Electrophoresis 2006;27:2782-6.
Bradford MM. A dye binding assay for protein. Anal Biochem 1976;72:248-54.
Smila KH, Muthezhilan R, Radhika S, Rajasekarapandian M. Studies on genetic confirmity of two micropropagated medicinal plants using isozymes. Bioinformatics Bioeng 2011;1:325-30.
Anbalagan K. An Introduction to Electrophoresis. Tamil Nadu, India: Electrophoresis Institute Yercaud; 1999. p. 101.
Reddy MM, Garber ED. Genetic studies of variant enzymes. III. Comparative electrophoretic studies of esterases and peroxidases for species, hybrids, and amphiploids in the genus Nicotiana
. Bot Gaz 1971;132:158-66.
Abbott LK, Robson AD, Boer GD. The effect of phosphorus on the formation of hyphae in soil by the vesicular-narbuscular mycorrhizal fungus, Glomus fasciculatum
. New Phytol 1984;97:437-46.
De KK, Roy SC. Role of an acid phosphatase isoenzyme in callus tissue during cytodifferentiation. Theor Appl Genet 1984;68:285-7.
Jayaraman KS, Ramanuja MN, Vijayaraghavan PK, Vaidyanathan CS. Oxidative enzyme in pearl millet. Food Chem 1987;24:203-10.
Wendel JF, Weeden NF, Soltis DE, Soltis PS, editors. Visualization and Interpretation of Plant Isozymes. Geneva, New York: Chapman and Hall; 1989. p. 18.
Smila KH, Muthezhilan R, Radhika S, Rajasekarapandian. Studies on genetic conformity of two micropropagated medicinal plants using isozymes. Biotechnol Bioinf Bioeng 2011;3:325-30.
Sneath PH, Sokal RR. Principles of Numerical Taxonomy. San Francisco: Freeman; 1963.
Jaccard, P. Nouvelles Recherches Sur La Distribution Florale. Bulletin de la Société vaudoise des Sciences Naturelles 1908;44:223-270.
Rohlf FJ. NTSYS-pc Numerical taxonomy and multivariate analysis system. Version 2.10 manual. N.Y: Applied Biostatistics, Inc.; 2000.
Johnson M, Irudayaraj V, Rajkumar DS. Isoperoxidase analysis on Thelypteris ciliate
(Wall. ex Benth.) Holttum (Thelypteridaceae
). Asian Pac J Trop Biomed 2012:S27-9.
Rahman MM, Hirata Y. Genetic diversity in Brassica
species using SDS-PAGE analysis. J Biol Sci 2004;4:234-8.
Vladova R, Tsanev V, Petcolicheva K. Seed storage proteins in Solanaceae
species. Biol Plant 2004;48:601-3.
Nair S, Keshavachandran R. Molecular diversity in chakkarakolli (Gymnema sylvestre
R. Br.) assessed through isozyme and RAPD analysis. J Trop Agric 2006;44:31-6.
Ramos MV, Freitas CD, Stanisçuaski F, Macedo LL, Sales MP, Sousa DP, et al
. Performance of distinct crop pests reared on diets enriched with latex proteins from Calotropis procera
: Role of laticifer proteins in plant defense. Plant Sci 2007;173:349-57.
Bhat TM, Kudesia R. Evaluation of genetic diversity in five different species of family solanaceae using cytological characters and protein profiling. Genet Eng Biotechnol J 2011;20:20-5.
Zubaida Y, Shahid M, Zabta S, Mir AK, Ashiq R. Evaluation of taxonomic status of medicinal species of the genus hyoscyamous, withania, atropa and datura based on poly acrylamide gel electrophoresis. Pak J Bot 2008;40:2289-97.
Ayten C, Acik L, Aytac Z. Biosystematics studies among Ebenus
L. species based on morphological, RAPD-PCR and seed protein analysis in turkey. Pak J Bot 2009;41:2477-86.
Hamrick JL, Godt MJ. Conservation genetics of endemic plant species. In: Conservation Genetics. US: Springer; 1996. p. 281-304.
Gasic K, Korban SS. Nonspecific binding of monoclonal anti-FLAG M2 antibody in Indian mustard (Brassica juncea
). Plant Mol Biol Rep 2005;23:9-16.
Johnson M. Biochemical variation studies in Aegle marmelos
(L.) con – A medicinally important plant. J Chem Pharm Res 2010;2:454-62.
Johnson M, Janakiraman N, Chalini K, Narayani M, Kalaiarasi V. Studies on developmental variation of isoperoxidase and protein profile of Zea mays
L. J Stress Physiol Biochem 2012;8:16-23.
Kaswan V, Joshi A, Maloo SR. Assessment of isozyme diversity in the medicinal plant Isabgol (Plantago ovata
Forsk). J Cell Tissue Res 2012;12:3349.
[Figure 1], [Figure 2], [Figure 3], [Figure 4], [Figure 5]